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US9580437, Example 35

E3L013037
Internal ID: BDB013037
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB013037/BDB013037.sdf
Basic Properties
Compound ID
E3L013037
Internal ID
BDB013037
Molecular formula
C24H26N6O
Molecular weight
414.513000
Exact mass
414.216809
XLogP
3.4424
TPSA
67.5800
HBA / HBD
6 / 1
Rotatable bonds
7
Heavy atoms / rings
31 / 5
Activity summary
IC50 unknown 8.30000000 nM
6 activity record(s) imported
InChIKey
RNUJULGJVKPSBQ-UHFFFAOYSA-N
SMILES
CN(C)CCc1ccc(-c2cnc(NCc3cccc4c3CCO4)n3cnnc23)cc1
Aliases
BDBM291720 (preferred) US9580437, Example 35 (source_name) BDBM291720 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM291720 medium
; target=Polycomb protein EED; Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM291720 Open - 10.7270/Q29W0JNH; 10.7270/Q24T6MD7
PubChem CID121433045 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)CCc1ccc(-c2cnc(NCc3cccc4c3CCO4)n3cnnc23)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB013037/BDB013037.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB013037/BDB013037.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB013037/BDB013037.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB013037/BDB013037.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB013037/BDB013037.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291720 IC50 8.3 nM Very high DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291720 IC50 33 nM High DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291720 IC50 15 nM High DOI: 10.7270/Q24T6MD7 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291720 IC50 15 nM High DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291720 IC50 33 nM High DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291720 IC50 8.3 nM Very high DOI: 10.7270/Q29W0JNH 1