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US9580437, Example 103

E3L013105
Internal ID: BDB013105
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB013105/BDB013105.sdf
Basic Properties
Compound ID
E3L013105
Internal ID
BDB013105
Molecular formula
C24H25N7O
Molecular weight
427.512000
Exact mass
427.212058
XLogP
3.6419
TPSA
80.4700
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
32 / 6
Activity summary
IC50 unknown 431.00000000 nM
4 activity record(s) imported
InChIKey
LAOYBMAUKNELIZ-UHFFFAOYSA-N
SMILES
Cc1cc(-c2cnc(NCc3cccc4c3CCO4)n3cnnc23)cnc1N1CCCC1
Aliases
BDBM291788 (preferred) US9580437, Example 103 (source_name) BDBM291788 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM291788 medium
; target=Polycomb protein EED; Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM291788 Open - 10.7270/Q29W0JNH; 10.7270/Q24T6MD7
PubChem CID121432964 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(-c2cnc(NCc3cccc4c3CCO4)n3cnnc23)cnc1N1CCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB013105/BDB013105.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB013105/BDB013105.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB013105/BDB013105.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB013105/BDB013105.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB013105/BDB013105.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291788 IC50 728 nM Moderate DOI: 10.7270/Q24T6MD7 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM291788 IC50 431 nM Moderate DOI: 10.7270/Q24T6MD7 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291788 IC50 431 nM Moderate DOI: 10.7270/Q29W0JNH 1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM291788 IC50 728 nM Moderate DOI: 10.7270/Q29W0JNH 1