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BDBM314102

E3L013831
Internal ID: BDB013831
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB013831/BDB013831.sdf
Basic Properties
Compound ID
E3L013831
Internal ID
BDB013831
Molecular formula
C14H14N2O3
Molecular weight
258.277000
Exact mass
258.100442
XLogP
1.8842
TPSA
82.4500
HBA / HBD
4 / 3
Rotatable bonds
5
Heavy atoms / rings
19 / 2
Activity summary
IC50 < 100.00000000 nM
3 activity record(s) imported
InChIKey
TWIVONJBMAMBGR-UHFFFAOYSA-N
SMILES
O=C(O)c1ccncc1NCc1ccc(CO)cc1
Aliases
BDBM314102 (preferred) 3-{[4-Hydroxymethyl)benzyl]amino}pyridine-4-carboxylic acid (source_name) BDBM314102 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM314102 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM314102 Open - 10.7270/Q26975NT; 10.7270/Q2J38VPZ; 10.7270/Q2GH9N46
PubChem CID90253477 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccncc1NCc1ccc(CO)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB013831/BDB013831.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB013831/BDB013831.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB013831/BDB013831.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB013831/BDB013831.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB013831/BDB013831.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM314102 IC50 <100 nM High DOI: 10.7270/Q26975NT 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM314102 IC50 <100 nM High DOI: 10.7270/Q2GH9N46 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM314102 IC50 <100 nM High DOI: 10.7270/Q2J38VPZ 1