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BDBM314134

E3L013863
Internal ID: BDB013863
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB013863/BDB013863.sdf
Basic Properties
Compound ID
E3L013863
Internal ID
BDB013863
Molecular formula
C15H12N2O3
Molecular weight
268.272000
Exact mass
268.084792
XLogP
3.1381
TPSA
75.3600
HBA / HBD
4 / 2
Rotatable bonds
4
Heavy atoms / rings
20 / 3
Activity summary
IC50 < 100.00000000 nM
3 activity record(s) imported
InChIKey
KBTXKDBCCCNVIZ-UHFFFAOYSA-N
SMILES
O=C(O)c1ccncc1NCc1coc2ccccc12
Aliases
BDBM314134 (preferred) 3-[(1-Benzofuran-3-ylmethyl)amino]pyridine-4-carboxylic acid (source_name) BDBM314134 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM314134 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM314134 Open - 10.7270/Q26975NT; 10.7270/Q2J38VPZ; 10.7270/Q2GH9N46
PubChem CID86728209 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccncc1NCc1coc2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB013863/BDB013863.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB013863/BDB013863.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB013863/BDB013863.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB013863/BDB013863.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB013863/BDB013863.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM314134 IC50 <100 nM High DOI: 10.7270/Q2GH9N46 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM314134 IC50 <100 nM High DOI: 10.7270/Q2J38VPZ 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM314134 IC50 <100 nM High DOI: 10.7270/Q26975NT 1