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BDBM318025

E3L014068
Internal ID: BDB014068
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB014068/BDB014068.sdf
Basic Properties
Compound ID
E3L014068
Internal ID
BDB014068
Molecular formula
C18H24N6O
Molecular weight
340.431000
Exact mass
340.201159
XLogP
0.8695
TPSA
68.3600
HBA / HBD
6 / 1
Rotatable bonds
3
Heavy atoms / rings
25 / 4
Activity summary
IC50 unknown 5390.00000000 nM
2 activity record(s) imported
InChIKey
DBBRJAYFAWANIO-UHFFFAOYSA-N
SMILES
CN1CCCc2c1nc(N1CCN(Cc3ccccn3)CC1)[nH]c2=O
Aliases
BDBM318025 (preferred) 8-Methyl-2-[4-(pyridin-2-ylmethyl)piperazin-1-yl]-3,5,6,7-tetrahydropyrido[2,3-d]pyrimidin-4-one (source_name) BDBM318025 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM318025 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM318025 Open - 10.7270/Q26112CZ
PubChem CID136987025 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCCc2c1nc(N1CCN(Cc3ccccn3)CC1)[nH]c2=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB014068/BDB014068.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB014068/BDB014068.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB014068/BDB014068.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB014068/BDB014068.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB014068/BDB014068.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM318025 IC50 16200 nM Low DOI: 10.7270/Q26112CZ 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM318025 IC50 5390 nM Low DOI: 10.7270/Q26112CZ 1