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BDBM319664

E3L014157
Internal ID: BDB014157
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB014157/BDB014157.sdf
Basic Properties
Compound ID
E3L014157
Internal ID
BDB014157
Molecular formula
C21H17F3N6
Molecular weight
410.403000
Exact mass
410.146679
XLogP
4.4790
TPSA
72.2800
HBA / HBD
4 / 1
Rotatable bonds
4
Heavy atoms / rings
30 / 5
Activity summary
IC50 unknown 300.00000000 nM
1 activity record(s) imported
InChIKey
JAGKRJVLUACVQE-UHFFFAOYSA-N
SMILES
FC(F)(F)c1[nH]nnc1-c1ccnc(-c2cn(CC3CCc4ccccc43)cn2)c1
Aliases
BDBM319664 (preferred) 2-[1-(2,3-dihydro-1H-inden-1-ylmethyl)imidazol-4-yl]-4-[5-(trifluoromethyl)-2H-triazol-4-yl]pyridine (source_name) BDBM319664 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM319664 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM319664 Open - 10.7270/Q2FT8PBQ
PubChem CID121454392 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready FC(F)(F)c1[nH]nnc1-c1ccnc(-c2cn(CC3CCc4ccccc43)cn2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB014157/BDB014157.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB014157/BDB014157.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB014157/BDB014157.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB014157/BDB014157.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB014157/BDB014157.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM319664 IC50 300 nM Moderate DOI: 10.7270/Q2FT8PBQ 1