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US10174026, Example 14

E3L014215
Internal ID: BDB014215
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB014215/BDB014215.sdf
Basic Properties
Compound ID
E3L014215
Internal ID
BDB014215
Molecular formula
C14H16N2O3
Molecular weight
260.293000
Exact mass
260.116092
XLogP
2.4128
TPSA
86.2100
HBA / HBD
3 / 3
Rotatable bonds
2
Heavy atoms / rings
19 / 3
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
MDKIIFAUVUDOPJ-UHFFFAOYSA-N
SMILES
O=C(O)c1ccnc2cc(C3(O)CCCCC3)[nH]c12
Aliases
BDBM320373 (preferred) US10174026, Example 14 (source_name) BDBM320373 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM320373 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM320373 Open - 10.7270/Q2VD71K6
PubChem CID117631083 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccnc2cc(C3(O)CCCCC3)[nH]c12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB014215/BDB014215.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB014215/BDB014215.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB014215/BDB014215.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB014215/BDB014215.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB014215/BDB014215.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM320373 IC50 550 nM Moderate DOI: 10.7270/Q2VD71K6 1