< Back to small molecule database

BDBM320385

E3L014227
Internal ID: BDB014227
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB014227/BDB014227.sdf
Basic Properties
Compound ID
E3L014227
Internal ID
BDB014227
Molecular formula
C13H14N2O2
Molecular weight
230.267000
Exact mass
230.105528
XLogP
2.9187
TPSA
65.9800
HBA / HBD
2 / 2
Rotatable bonds
2
Heavy atoms / rings
17 / 3
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
MJGNHAKBDPMKTA-UHFFFAOYSA-N
SMILES
O=C(O)c1ccnc2cc(C3CCCC3)[nH]c12
Aliases
BDBM320385 (preferred) 2-cyclopentyl-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid (source_name) BDBM320385 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM320385 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM320385 Open - 10.7270/Q2VD71K6
PubChem CID117631780 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccnc2cc(C3CCCC3)[nH]c12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB014227/BDB014227.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB014227/BDB014227.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB014227/BDB014227.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB014227/BDB014227.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB014227/BDB014227.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM320385 IC50 550 nM Moderate DOI: 10.7270/Q2VD71K6 1