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BDBM332708

E3L014364
Internal ID: BDB014364
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB014364/BDB014364.sdf
Basic Properties
Compound ID
E3L014364
Internal ID
BDB014364
Molecular formula
C16H17N7O
Molecular weight
323.360000
Exact mass
323.149458
XLogP
0.7784
TPSA
104.0300
HBA / HBD
6 / 2
Rotatable bonds
3
Heavy atoms / rings
24 / 4
Activity summary
IC50 unknown 48.00000000 nM
1 activity record(s) imported
InChIKey
HVYNWTOZTVWLFR-UHFFFAOYSA-N
SMILES
NC(=O)c1cccc2[nH]c(N3CCN(c4ncccn4)CC3)nc12
Aliases
BDBM332708 (preferred) 2-[4-(2-Pyrimidinyl)-1-piperazinyl]-1h-benzimidazole-7-carboxamide (source_name) BDBM332708 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM332708 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM332708 Open - 10.7270/Q2TT4T17
PubChem CID87055716 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cccc2[nH]c(N3CCN(c4ncccn4)CC3)nc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB014364/BDB014364.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB014364/BDB014364.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB014364/BDB014364.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB014364/BDB014364.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB014364/BDB014364.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM332708 IC50 48 nM High DOI: 10.7270/Q2TT4T17 1