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BDBM343824

E3L015085
Internal ID: BDB015085
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB015085/BDB015085.sdf
Basic Properties
Compound ID
E3L015085
Internal ID
BDB015085
Molecular formula
C25H27N5O
Molecular weight
413.525000
Exact mass
413.221560
XLogP
3.4664
TPSA
66.2100
HBA / HBD
5 / 2
Rotatable bonds
6
Heavy atoms / rings
31 / 5
Activity summary
IC50 unknown 33.00000000 nM
2 activity record(s) imported
InChIKey
PNOIRPBZBNYURC-UHFFFAOYSA-N
SMILES
Cn1cnc2ccc(-c3ccnc(NCC(O)CN4CCc5ccccc5C4)c3)cc21
Aliases
BDBM343824 (preferred) 1-(3,4-Dihydroisoquinolin-2(1H)-yl)-3-((4-(1-methyl-1H-benzo[d]imidazol-6-yl)pyridin-2-yl)amino)propan-2-ol (source_name) BDBM343824 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM343824 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM343824 Open - 10.7270/Q26975QQ; 10.1021/acsmedchemlett.5b00380 PMID: 26985292
PubChem CID86729258 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cnc2ccc(-c3ccnc(NCC(O)CN4CCc5ccccc5C4)c3)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB015085/BDB015085.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB015085/BDB015085.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB015085/BDB015085.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB015085/BDB015085.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB015085/BDB015085.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM343824 IC50 <100 nM High DOI: 10.7270/Q26975QQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM343824 IC50 33 nM High DOI: 10.1021/acsmedchemlett.5b00380
PMID: 26985292 		1