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BDBM343969

E3L015228
Internal ID: BDB015228
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB015228/BDB015228.sdf
Basic Properties
Compound ID
E3L015228
Internal ID
BDB015228
Molecular formula
C31H34N4O3
Molecular weight
510.638000
Exact mass
510.263091
XLogP
4.1237
TPSA
70.8300
HBA / HBD
5 / 1
Rotatable bonds
8
Heavy atoms / rings
38 / 6
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
QEMFANCDUKFSHM-UHFFFAOYSA-N
SMILES
O=C(Cn1cnc2ccc(-c3cccc(OCC(O)CN4CCc5ccccc5C4)c3)cc21)N1CCCC1
Aliases
BDBM343969 (preferred) 2-[6-[3-[3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropoxy]phenyl]benzimidazol-1-yl]-1-pyrrolidin-1-ylethanone (source_name) BDBM343969 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM343969 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM343969 Open - 10.7270/Q26975QQ
PubChem CID90248419 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(Cn1cnc2ccc(-c3cccc(OCC(O)CN4CCc5ccccc5C4)c3)cc21)N1CCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB015228/BDB015228.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB015228/BDB015228.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB015228/BDB015228.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB015228/BDB015228.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB015228/BDB015228.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM343969 IC50 550 nM Moderate DOI: 10.7270/Q26975QQ 1