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US10202354, Example 111

E3L015444
Internal ID: BDB015444
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB015444/BDB015444.sdf
Basic Properties
Compound ID
E3L015444
Internal ID
BDB015444
Molecular formula
C16H24N4O3S
Molecular weight
352.460000
Exact mass
352.156912
XLogP
0.6930
TPSA
65.4500
HBA / HBD
6 / 0
Rotatable bonds
4
Heavy atoms / rings
24 / 3
Activity summary
IC50 unknown 13.00000000 nM
1 activity record(s) imported
InChIKey
SKYNZUSMXIDNEO-UHFFFAOYSA-N
SMILES
CCN1CCN(C2=NCCN2S(=O)(=O)c2ccccc2OC)CC1
Aliases
BDBM345446 (preferred) US10202354, Example 111 (source_name) BDBM345446 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM345446 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM345446 Open - 10.7270/Q2VT1V62
PubChem CID121477839 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN1CCN(C2=NCCN2S(=O)(=O)c2ccccc2OC)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB015444/BDB015444.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB015444/BDB015444.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB015444/BDB015444.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB015444/BDB015444.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB015444/BDB015444.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM345446 IC50 13 nM High DOI: 10.7270/Q2VT1V62 1