< Back to small molecule database

US10273222, Example 3

E3L016938
Internal ID: BDB016938
Activity data available Local docking-ready structure
Dock with P29375 Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB016938/BDB016938.sdf
Basic Properties
Compound ID
E3L016938
Internal ID
BDB016938
Molecular formula
C17H15N3O3
Molecular weight
309.325000
Exact mass
309.111341
XLogP
2.8613
TPSA
88.2400
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
23 / 3
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
KHSDTLGQWSEUAQ-UHFFFAOYSA-N
SMILES
Cc1ccc(-c2c(-c3cc(C(=O)O)ccn3)ncn2C)cc1O
Aliases
BDBM381932 (preferred) US10273222, Example 3 (source_name) BDBM381932 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM381932 medium
; target=Lysine-specific demethylase 5A
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM381932 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM381932 Open - 10.7270/Q2DF6THR
PubChem CID86268884 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(-c2c(-c3cc(C(=O)O)ccn3)ncn2C)cc1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB016938/BDB016938.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB016938/BDB016938.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB016938/BDB016938.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB016938/BDB016938.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB016938/BDB016938.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM381932 IC50 550 nM Moderate DOI: 10.7270/Q2DF6THR 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM381932 IC50 <100 nM High DOI: 10.7270/Q2DF6THR 1