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US10273222, Example 70

E3L017000
Internal ID: BDB017000
Activity data available Local docking-ready structure
Dock with P29375 Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017000/BDB017000.sdf
Basic Properties
Compound ID
E3L017000
Internal ID
BDB017000
Molecular formula
C20H21FN4O2
Molecular weight
368.412000
Exact mass
368.164854
XLogP
3.3045
TPSA
71.2500
HBA / HBD
4 / 1
Rotatable bonds
8
Heavy atoms / rings
27 / 3
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
APXJVQHWHOFBFC-UHFFFAOYSA-N
SMILES
CCN(CCn1cnc(-c2cc(C(=O)O)ccn2)c1)Cc1ccc(F)cc1
Aliases
BDBM382010 (preferred) US10273222, Example 70 (source_name) BDBM382010 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM382010 medium
; target=Lysine-specific demethylase 5A
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM382010 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM382010 Open - 10.7270/Q2DF6THR
PubChem CID90407392 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN(CCn1cnc(-c2cc(C(=O)O)ccn2)c1)Cc1ccc(F)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017000/BDB017000.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017000/BDB017000.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017000/BDB017000.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017000/BDB017000.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017000/BDB017000.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM382010 IC50 <100 nM High DOI: 10.7270/Q2DF6THR 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM382010 IC50 <100 nM High DOI: 10.7270/Q2DF6THR 1