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US10273222, Example 116

E3L017046
Internal ID: BDB017046
Activity data available Local docking-ready structure
Dock with P29375 Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017046/BDB017046.sdf
Basic Properties
Compound ID
E3L017046
Internal ID
BDB017046
Molecular formula
C20H19N3O2
Molecular weight
333.391000
Exact mass
333.147727
XLogP
3.7634
TPSA
68.0100
HBA / HBD
3 / 1
Rotatable bonds
4
Heavy atoms / rings
25 / 4
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
XHNIEVIJHDHWDQ-UHFFFAOYSA-N
SMILES
O=C(O)c1ccnc(-c2cn(CC3CCCc4ccccc43)cn2)c1
Aliases
BDBM382056 (preferred) US10273222, Example 116 (source_name) BDBM382056 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM382056 medium
; target=Lysine-specific demethylase 5A
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM382056 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM382056 Open - 10.7270/Q2DF6THR
PubChem CID90407440 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)c1ccnc(-c2cn(CC3CCCc4ccccc43)cn2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017046/BDB017046.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017046/BDB017046.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017046/BDB017046.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017046/BDB017046.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017046/BDB017046.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM382056 IC50 <100 nM High DOI: 10.7270/Q2DF6THR 1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM382056 IC50 <100 nM High DOI: 10.7270/Q2DF6THR 1