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US10280149, Example 7

E3L017101
Internal ID: BDB017101
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017101/BDB017101.sdf
Basic Properties
Compound ID
E3L017101
Internal ID
BDB017101
Molecular formula
C21H25NO2
Molecular weight
323.436000
Exact mass
323.188529
XLogP
4.1531
TPSA
29.5400
HBA / HBD
3 / 0
Rotatable bonds
5
Heavy atoms / rings
24 / 4
Activity summary
IC50 unknown 123.00000000 nM
1 activity record(s) imported
InChIKey
FRZXPZFVZUQQHN-LJQANCHMSA-N
SMILES
COc1ccc2cc(C(=O)[C@@H]3CCCN(CC4CC4)C3)ccc2c1
Aliases
BDBM383502 (preferred) US10280149, Example 7 (source_name) BDBM383502 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383502 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383502 Open - 10.7270/Q2VD71SW
PubChem CID25303616 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc2cc(C(=O)[C@@H]3CCCN(CC4CC4)C3)ccc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017101/BDB017101.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017101/BDB017101.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017101/BDB017101.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017101/BDB017101.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017101/BDB017101.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383502 IC50 123 nM Moderate DOI: 10.7270/Q2VD71SW 1