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(6-Methoxy-2-naphthyl)-(1-propyl-3-piperidyl)methanone

E3L017110
Internal ID: BDB017110
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017110/BDB017110.sdf
Basic Properties
Compound ID
E3L017110
Internal ID
BDB017110
Molecular formula
C20H25NO2
Molecular weight
311.425000
Exact mass
311.188529
XLogP
4.1531
TPSA
29.5400
HBA / HBD
3 / 0
Rotatable bonds
5
Heavy atoms / rings
23 / 3
Activity summary
IC50 unknown 161.00000000 nM
1 activity record(s) imported
InChIKey
DISJECWYEXGJJD-UHFFFAOYSA-N
SMILES
CCCN1CCCC(C(=O)c2ccc3cc(OC)ccc3c2)C1
Aliases
BDBM383511 (preferred) (6-Methoxy-2-naphthyl)-(1-propyl-3-piperidyl)methanone (source_name) BDBM383511 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383511 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383511 Open - 10.7270/Q2VD71SW
PubChem CID134195561 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCN1CCCC(C(=O)c2ccc3cc(OC)ccc3c2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017110/BDB017110.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017110/BDB017110.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017110/BDB017110.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017110/BDB017110.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017110/BDB017110.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383511 IC50 161 nM Moderate DOI: 10.7270/Q2VD71SW 1