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BDBM383536

E3L017135
Internal ID: BDB017135
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017135/BDB017135.sdf
Basic Properties
Compound ID
E3L017135
Internal ID
BDB017135
Molecular formula
C22H24N2O
Molecular weight
332.447000
Exact mass
332.188863
XLogP
4.5488
TPSA
44.1000
HBA / HBD
3 / 0
Rotatable bonds
3
Heavy atoms / rings
25 / 4
Activity summary
IC50 unknown 267.00000000 nM
1 activity record(s) imported
InChIKey
WEDXWDRDYGPCBI-UHFFFAOYSA-N
SMILES
N#Cc1cc(C(=O)C2CCCN(C3CCCC3)C2)cc2ccccc12
Aliases
BDBM383536 (preferred) 3-(1-Cyclopentylpiperidine-3-carbonyl)naphthalene-1-carbonitrile (source_name) BDBM383536 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383536 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383536 Open - 10.7270/Q2VD71SW
PubChem CID121479042 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1cc(C(=O)C2CCCN(C3CCCC3)C2)cc2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017135/BDB017135.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017135/BDB017135.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017135/BDB017135.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017135/BDB017135.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017135/BDB017135.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383536 IC50 267 nM Moderate DOI: 10.7270/Q2VD71SW 1