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BDBM383538

E3L017137
Internal ID: BDB017137
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017137/BDB017137.sdf
Basic Properties
Compound ID
E3L017137
Internal ID
BDB017137
Molecular formula
C21H24N2O2
Molecular weight
336.435000
Exact mass
336.183778
XLogP
3.3859
TPSA
63.4000
HBA / HBD
3 / 1
Rotatable bonds
4
Heavy atoms / rings
25 / 4
Activity summary
IC50 unknown 100.00000000 nM
1 activity record(s) imported
InChIKey
KTTPMHDDOLMOHS-UHFFFAOYSA-N
SMILES
NC(=O)c1cc(C(=O)C2CCCN(C3CCC3)C2)cc2ccccc12
Aliases
BDBM383538 (preferred) 3-(1-Cyclobutylpiperidine-3-carbonyl)naphthalene-1-carboxamide (source_name) BDBM383538 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383538 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383538 Open - 10.7270/Q2VD71SW
PubChem CID121479012 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cc(C(=O)C2CCCN(C3CCC3)C2)cc2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017137/BDB017137.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017137/BDB017137.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017137/BDB017137.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017137/BDB017137.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017137/BDB017137.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383538 IC50 100 nM High DOI: 10.7270/Q2VD71SW 1