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BDBM383561

E3L017160
Internal ID: BDB017160
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017160/BDB017160.sdf
Basic Properties
Compound ID
E3L017160
Internal ID
BDB017160
Molecular formula
C21H24N2O
Molecular weight
320.436000
Exact mass
320.188863
XLogP
4.3246
TPSA
44.1000
HBA / HBD
3 / 0
Rotatable bonds
4
Heavy atoms / rings
24 / 3
Activity summary
IC50 unknown 92.00000000 nM
1 activity record(s) imported
InChIKey
ISAYTCQDSBMWDK-UHFFFAOYSA-N
SMILES
CCCN1CCCC(C(=O)c2ccc3c(C)c(C#N)ccc3c2)C1
Aliases
BDBM383561 (preferred) 1-Methyl-6-(1-propylpiperidine-3-carbonyl)-2-naphthonitrile (source_name) BDBM383561 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383561 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383561 Open - 10.7270/Q2VD71SW
PubChem CID121479371 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCN1CCCC(C(=O)c2ccc3c(C)c(C#N)ccc3c2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017160/BDB017160.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017160/BDB017160.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017160/BDB017160.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017160/BDB017160.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017160/BDB017160.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383561 IC50 92 nM High DOI: 10.7270/Q2VD71SW 1