< Back to small molecule database

US10280149, Example 119

E3L017203
Internal ID: BDB017203
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017203/BDB017203.sdf
Basic Properties
Compound ID
E3L017203
Internal ID
BDB017203
Molecular formula
C19H24N2O
Molecular weight
296.414000
Exact mass
296.188863
XLogP
3.4830
TPSA
25.2400
HBA / HBD
2 / 0
Rotatable bonds
4
Heavy atoms / rings
22 / 4
Activity summary
IC50 unknown 2300.00000000 nM
1 activity record(s) imported
InChIKey
JOFDGDRRYNOWIO-UHFFFAOYSA-N
SMILES
Cn1ccc2ccc(C(=O)C3CCCN(CC4CC4)C3)cc21
Aliases
BDBM383605 (preferred) US10280149, Example 119 (source_name) BDBM383605 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383605 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383605 Open - 10.7270/Q2VD71SW
PubChem CID121479050 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1ccc2ccc(C(=O)C3CCCN(CC4CC4)C3)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017203/BDB017203.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017203/BDB017203.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017203/BDB017203.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017203/BDB017203.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017203/BDB017203.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383605 IC50 2300 nM Low DOI: 10.7270/Q2VD71SW 1