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US10280149, Example 124

E3L017208
Internal ID: BDB017208
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017208/BDB017208.sdf
Basic Properties
Compound ID
E3L017208
Internal ID
BDB017208
Molecular formula
C19H23N3O
Molecular weight
309.413000
Exact mass
309.184112
XLogP
3.1770
TPSA
38.1300
HBA / HBD
3 / 0
Rotatable bonds
5
Heavy atoms / rings
23 / 4
Activity summary
IC50 unknown 656.00000000 nM
1 activity record(s) imported
InChIKey
XOIDLSKXTNAWBW-UHFFFAOYSA-N
SMILES
O=C(c1cnn(-c2ccccc2)c1)C1CCCN(CC2CC2)C1
Aliases
BDBM383610 (preferred) US10280149, Example 124 (source_name) BDBM383610 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383610 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383610 Open - 10.7270/Q2VD71SW
PubChem CID121479053 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(c1cnn(-c2ccccc2)c1)C1CCCN(CC2CC2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017208/BDB017208.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017208/BDB017208.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017208/BDB017208.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017208/BDB017208.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017208/BDB017208.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383610 IC50 656 nM Moderate DOI: 10.7270/Q2VD71SW 1