< Back to small molecule database

BDBM383617

E3L017215
Internal ID: BDB017215
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017215/BDB017215.sdf
Basic Properties
Compound ID
E3L017215
Internal ID
BDB017215
Molecular formula
C20H22BrNO
Molecular weight
372.306000
Exact mass
371.088476
XLogP
4.9070
TPSA
20.3100
HBA / HBD
2 / 0
Rotatable bonds
4
Heavy atoms / rings
23 / 4
Activity summary
IC50 unknown 226.00000000 nM
1 activity record(s) imported
InChIKey
XPCWZTUROPZJHV-GOSISDBHSA-N
SMILES
O=C(c1ccc2cc(Br)ccc2c1)[C@@H]1CCCN(CC2CC2)C1
Aliases
BDBM383617 (preferred) (6-Bromonaphthalen-2-yl)(1-(cyclopropylmethyl)piperidin-3-yl)methanone (source_name) BDBM383617 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383617 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383617 Open - 10.7270/Q2VD71SW
PubChem CID121479163 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(c1ccc2cc(Br)ccc2c1)[C@@H]1CCCN(CC2CC2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017215/BDB017215.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017215/BDB017215.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017215/BDB017215.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017215/BDB017215.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017215/BDB017215.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383617 IC50 226 nM Moderate DOI: 10.7270/Q2VD71SW 1