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US10280149, Example 144b

E3L017243
Internal ID: BDB017243
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017243/BDB017243.sdf
Basic Properties
Compound ID
E3L017243
Internal ID
BDB017243
Molecular formula
C25H33NO2
Molecular weight
379.544000
Exact mass
379.251129
XLogP
5.5678
TPSA
29.5400
HBA / HBD
3 / 0
Rotatable bonds
6
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 269.00000000 nM
1 activity record(s) imported
InChIKey
AOWGSMLSSRLGTA-RDPSFJRHSA-N
SMILES
COc1ccc2cc(C(=O)[C@H]3CN(C4CCC4)CC[C@H]3CC(C)C)ccc2c1
Aliases
BDBM383645 (preferred) US10280149, Example 144b (source_name) BDBM383645 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383645 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383645 Open - 10.7270/Q2VD71SW
PubChem CID121479200 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc2cc(C(=O)[C@H]3CN(C4CCC4)CC[C@H]3CC(C)C)ccc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017243/BDB017243.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017243/BDB017243.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017243/BDB017243.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017243/BDB017243.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017243/BDB017243.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383645 IC50 269 nM Moderate DOI: 10.7270/Q2VD71SW 1