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US10280149, Example 162b

E3L017268
Internal ID: BDB017268
Activity data available Local docking-ready structure
Dock with Q8NHM5
Structure
/e3_file/ligand_db/generated/BDB017268/BDB017268.sdf
Basic Properties
Compound ID
E3L017268
Internal ID
BDB017268
Molecular formula
C23H26N2O
Molecular weight
346.474000
Exact mass
346.204513
XLogP
4.7948
TPSA
44.1000
HBA / HBD
3 / 0
Rotatable bonds
3
Heavy atoms / rings
26 / 4
Activity summary
IC50 unknown 86.00000000 nM
1 activity record(s) imported
InChIKey
IBINDGLCWNAGKB-OPAMFIHVSA-N
SMILES
C[C@@H]1CCN(C2CCCC2)C[C@H]1C(=O)c1ccc2cc(C#N)ccc2c1
Aliases
BDBM383670 (preferred) US10280149, Example 162b (source_name) BDBM383670 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8NHM5 KDM2B;CXXC2;FBL10;FBXL10;JHDM1B;NDY1;PCCX2
Lysine-specific demethylase 2B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM383670 medium
; target=Lysine-specific demethylase 2B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM383670 Open - 10.7270/Q2VD71SW
PubChem CID121479021 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@H]1CCN(C2CCCC2)C[C@H]1C(=O)c1ccc2cc(C#N)ccc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017268/BDB017268.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017268/BDB017268.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017268/BDB017268.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017268/BDB017268.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017268/BDB017268.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 2B
Q8NHM5
E3 ligase component 		BindingDB:BDBM383670 IC50 86 nM High DOI: 10.7270/Q2VD71SW 1