E3Docker 2.0

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US10398702, Example 4

E3L017484

Internal ID: BDB017484

Activity data available Local docking-ready structure

Dock with P98170 Dock with Q13490

Structure

/e3_file/ligand_db/generated/BDB017484/BDB017484.sdf

Basic Properties

Compound ID

E3L017484

Internal ID

BDB017484

Molecular formula

C63H73F3N10O8

Molecular weight

1155.333000

Exact mass

1154.556494

XLogP

6.1143

TPSA

206.0200

HBA / HBD

12 / 6

Rotatable bonds

Heavy atoms / rings

84 / 10

Activity summary

IC50 unknown 4.00000000 nM
4 activity record(s) imported

InChIKey

YAZQOISVPGFMGA-JCSBTUTESA-N

SMILES

CN[C@@H](C)C(=O)N[C@H](C(=O)N1Cc2ccc(NC(=O)c3ccc(NC(=O)C4(C)CN(C(=O)CN5C[C@@H](C)NC[C@@H]5CN5CCOC[C@H]5C)c5cc(Cc6ccc(F)cc6)ccc54)cc3)cc2[C@H]1C(=O)Nc1c(F)cccc1F)C1CCOCC1

Aliases

BDBM412165 (preferred) US10398702, Example 4 (source_name) BDBM412165 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P98170	XIAP;API3;BIRC4;IAP3 E3 ubiquitin-protein ligase XIAP	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM412165	medium ; target=E3 ubiquitin-protein ligase XIAP
Q13490	BIRC2;API1;MIHB;RNF48 Baculoviral IAP repeat-containing protein 2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM412165	medium ; target=Baculoviral IAP repeat-containing protein 2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM412165	Open	-	10.7270/Q2VH5R67
PubChem	CID138626272	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	CN[C@@H](C)C(=O)N[C@H](C(=O)N1Cc2ccc(NC(=O)c3ccc(NC(=O)C4(C)CN(C(=O)CN5C[C@@H](C)NC[C@@H]5CN5CCOC[C@H]5C)c5cc(Cc6ccc(F)cc6)ccc54)cc3)cc2[C@H]1C(=O)Nc1c(F)cccc1F)C1CCOCC1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB017484/BDB017484.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB017484/BDB017484.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB017484/BDB017484.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB017484/BDB017484.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB017484/BDB017484.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Baculoviral IAP repeat-containing protein 2 Q13490 E3 ligase component	BindingDB:BDBM412165	IC50	4 nM	Very high	DOI: 10.7270/Q2VH5R67	1
Baculoviral IAP repeat-containing protein 2 Q13490 E3 ligase component	BindingDB:BDBM412165	IC50	35 nM	High	DOI: 10.7270/Q2VH5R67	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM412165	IC50	5 nM	Very high	DOI: 10.7270/Q2VH5R67	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM412165	IC50	13 nM	High	DOI: 10.7270/Q2VH5R67	1