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BDBM420312

E3L017733
Internal ID: BDB017733
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB017733/BDB017733.sdf
Basic Properties
Compound ID
E3L017733
Internal ID
BDB017733
Molecular formula
C25H28BrN3O2
Molecular weight
482.422000
Exact mass
481.136489
XLogP
5.0953
TPSA
73.9900
HBA / HBD
3 / 3
Rotatable bonds
7
Heavy atoms / rings
31 / 3
Activity summary
IC50 unknown 50.00000000 nM
2 activity record(s) imported
InChIKey
SNUWAWGCYPMRAZ-UHFFFAOYSA-N
SMILES
Cc1cc(Cc2ccccc2)c(CNC(=O)c2cc(Br)cc(NC(C)C)c2C)c(=O)[nH]1
Aliases
BDBM420312 (preferred) N-[(4-benzyl-6-methyl-2-oxo-1H-pyridin-3-yl)methyl]-5-bromo-2-methyl-3-(propan-2-ylamino)benzamide (source_name) BDBM420312 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM420312 medium
; target=Polycomb protein EED
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM420312 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM420312 Open - 10.7270/Q2M61NMK
PubChem CID118046951 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(Cc2ccccc2)c(CNC(=O)c2cc(Br)cc(NC(C)C)c2C)c(=O)[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB017733/BDB017733.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB017733/BDB017733.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB017733/BDB017733.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB017733/BDB017733.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB017733/BDB017733.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM420312 IC50 50 nM High DOI: 10.7270/Q2M61NMK 1
Polycomb protein EED
Q09028
E3 ligase component 		BindingDB:BDBM420312 IC50 50 nM High DOI: 10.7270/Q2M61NMK 1