< Back to small molecule database

US10570140, Example 49

E3L018152
Internal ID: BDB018152
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB018152/BDB018152.sdf
Basic Properties
Compound ID
E3L018152
Internal ID
BDB018152
Molecular formula
C19H20N4O5
Molecular weight
384.392000
Exact mass
384.143370
XLogP
0.9942
TPSA
124.8800
HBA / HBD
8 / 3
Rotatable bonds
3
Heavy atoms / rings
28 / 5
Activity summary
IC50 unknown 229.00000000 nM
2 activity record(s) imported
InChIKey
YQLFBSKSTZBEAG-WTLGNFPFSA-N
SMILES
C[C@@]1(O)[C@@H](Cc2ccc3c(c2)OCO3)O[C@@H](n2ccc3c(N)ncnc32)[C@@H]1O
Aliases
BDBM435652 (preferred) US10570140, Example 49 (source_name) BDBM435652 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM435652 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM435652 Open - 10.7270/Q2WM1GTT; 10.7270/Q2N58QJ4
PubChem CID137479643 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@@]1(O)[C@@H](Cc2ccc3c(c2)OCO3)O[C@@H](n2ccc3c(N)ncnc32)[C@@H]1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB018152/BDB018152.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB018152/BDB018152.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB018152/BDB018152.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB018152/BDB018152.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB018152/BDB018152.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM435652 IC50 229 nM Moderate DOI: 10.7270/Q2WM1GTT 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM435652 IC50 229 nM Moderate DOI: 10.7270/Q2N58QJ4 1