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8-(2-(3,5-Dimethylpiperazin-1-yl)-4-

E3L019111
Internal ID: BDB019111
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB019111/BDB019111.sdf
Basic Properties
Compound ID
E3L019111
Internal ID
BDB019111
Molecular formula
C27H28FN9O
Molecular weight
513.581000
Exact mass
513.240085
XLogP
3.2391
TPSA
116.2900
HBA / HBD
9 / 2
Rotatable bonds
5
Heavy atoms / rings
38 / 6
Activity summary
IC50 unknown 2.30000000 nM
3 activity record(s) imported
InChIKey
ZGCGVCMUJCQTAY-UHFFFAOYSA-N
SMILES
Cc1nc(N2CC(C)NC(C)C2)ncc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cnc(C#N)c12
Aliases
BDBM451053 (preferred) 8-(2-(3,5-Dimethylpiperazin-1-yl)-4- (source_name) BDBM451053 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM451053 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM451053 Open - 10.7270/Q2TQ64M9
PubChem CID139346228 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc(N2CC(C)NC(C)C2)ncc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cnc(C#N)c12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB019111/BDB019111.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB019111/BDB019111.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB019111/BDB019111.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB019111/BDB019111.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB019111/BDB019111.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM451053 IC50 13 nM High DOI: 10.7270/Q2TQ64M9 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM451053 IC50 2.3 nM Very high DOI: 10.7270/Q2TQ64M9 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM451053 IC50 5.7 nM Very high DOI: 10.7270/Q2TQ64M9 1