E3Docker 2.0

US10730870, Example 60

E3L019389

Internal ID: BDB019389

Activity data available Local docking-ready structure

Structure

/e3_file/ligand_db/generated/BDB019389/BDB019389.sdf

Basic Properties

Compound ID

E3L019389

Internal ID

BDB019389

Molecular formula

C50H66N8O8S4

Molecular weight

1035.394000

Exact mass

1034.388645

XLogP

5.6300

TPSA

223.2600

HBA / HBD

14 / 6

Rotatable bonds

Heavy atoms / rings

70 / 6

Activity summary

IC50 unknown 293.00000000 nM
8 activity record(s) imported

InChIKey

DWQVWSUROTUMEJ-GAUXMKQTSA-N

SMILES

Cc1ncsc1-c1ccc(CNC(=O)[C@H]2C[C@H](O)CN2C(=O)[C@@H](CSSC[C@H](NC(=O)CCC(C)C)C(=O)N2C[C@H](O)C[C@H]2C(=O)NCc2ccc(-c3scnc3C)cc2)NC(=O)CCC(C)C)cc1

Aliases

BDBM454897 (preferred) US10730870, Example 60 (source_name) BDBM454897 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P40337	VHL von Hippel-Lindau disease tumor suppressor	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM454897	medium ; target=von Hippel-Lindau disease tumor suppressor; Cullin-2
P62877	RBX1;RNF75;ROC1 E3 ubiquitin-protein ligase RBX1	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM454897	medium ; target=Cullin-2
Q13617	CUL2 Cullin-2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM454897	medium ; target=Cullin-2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM454897	Open	-	10.7270/Q2WD43MN; 10.7270/Q20K2DC4
PubChem	CID122529218	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	Cc1ncsc1-c1ccc(CNC(=O)[C@H]2C[C@H](O)CN2C(=O)[C@@H](CSSC[C@H](NC(=O)CCC(C)C)C(=O)N2C[C@H](O)C[C@H]2C(=O)NCc2ccc(-c3scnc3C)cc2)NC(=O)CCC(C)C)cc1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB019389/BDB019389.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB019389/BDB019389.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB019389/BDB019389.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB019389/BDB019389.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB019389/BDB019389.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Cullin-2 P62877 E3 ligase component	BindingDB:BDBM454897	IC50	293 nM	Moderate	DOI: 10.7270/Q20K2DC4	1
Cullin-2 Q13617 E3 ligase component	BindingDB:BDBM454897	IC50	293 nM	Moderate	DOI: 10.7270/Q20K2DC4	1
Cullin-2 P40337 E3 ligase component	BindingDB:BDBM454897	IC50	293 nM	Moderate	DOI: 10.7270/Q20K2DC4	1
Cullin-2 Q13617 E3 ligase component	BindingDB:BDBM454897	IC50	1450 nM	Low	DOI: 10.7270/Q20K2DC4	1
Cullin-2 P40337 E3 ligase component	BindingDB:BDBM454897	IC50	1450 nM	Low	DOI: 10.7270/Q20K2DC4	1
Cullin-2 P62877 E3 ligase component	BindingDB:BDBM454897	IC50	1450 nM	Low	DOI: 10.7270/Q20K2DC4	1
von Hippel-Lindau disease tumor suppressor P40337 E3 ligase component	BindingDB:BDBM454897	IC50	1450 nM	Low	DOI: 10.7270/Q2WD43MN	1
von Hippel-Lindau disease tumor suppressor P40337 E3 ligase component	BindingDB:BDBM454897	IC50	293 nM	Moderate	DOI: 10.7270/Q2WD43MN	1