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US10730870, Example 104

E3L019427
Internal ID: BDB019427
Activity data available Local docking-ready structure
Dock with P40337 Dock with P62877 Dock with Q13617
Structure
/e3_file/ligand_db/generated/BDB019427/BDB019427.sdf
Basic Properties
Compound ID
E3L019427
Internal ID
BDB019427
Molecular formula
C30H38N4O3S
Molecular weight
534.726000
Exact mass
534.266462
XLogP
3.9435
TPSA
94.5600
HBA / HBD
6 / 3
Rotatable bonds
11
Heavy atoms / rings
38 / 4
Activity summary
IC50 > 10000.00000000 nM
4 activity record(s) imported
InChIKey
QGUGPQZSTUMLQR-JYIOINSGSA-N
SMILES
CC[C@H](C)[C@H](NCCc1ccccc1)C(=O)N1C[C@H](O)C[C@H]1C(=O)NCc1ccc(-c2scnc2C)cc1
Aliases
BDBM454937 (preferred) US10730870, Example 104 (source_name) BDBM454937 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM454937 medium
; target=von Hippel-Lindau disease tumor suppressor; Cullin-2
P62877 RBX1;RNF75;ROC1
E3 ubiquitin-protein ligase RBX1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM454937 medium
; target=Cullin-2
Q13617 CUL2
Cullin-2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM454937 medium
; target=Cullin-2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM454937 Open - 10.7270/Q2WD43MN; 10.7270/Q20K2DC4
PubChem CID122528965 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC[C@H](C)[C@H](NCCc1ccccc1)C(=O)N1C[C@H](O)C[C@H]1C(=O)NCc1ccc(-c2scnc2C)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB019427/BDB019427.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB019427/BDB019427.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB019427/BDB019427.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB019427/BDB019427.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB019427/BDB019427.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cullin-2
P40337
E3 ligase component 		BindingDB:BDBM454937 IC50 >10000 nM Low DOI: 10.7270/Q20K2DC4 1
Cullin-2
P62877
E3 ligase component 		BindingDB:BDBM454937 IC50 >10000 nM Low DOI: 10.7270/Q20K2DC4 1
Cullin-2
Q13617
E3 ligase component 		BindingDB:BDBM454937 IC50 >10000 nM Low DOI: 10.7270/Q20K2DC4 1
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM454937 IC50 >10000 nM Low DOI: 10.7270/Q2WD43MN 1