< Back to small molecule database

US10807959, Example 130

E3L019558
Internal ID: BDB019558
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB019558/BDB019558.sdf
Basic Properties
Compound ID
E3L019558
Internal ID
BDB019558
Molecular formula
C25H25N3O4
Molecular weight
431.492000
Exact mass
431.184506
XLogP
4.4470
TPSA
78.5200
HBA / HBD
5 / 1
Rotatable bonds
8
Heavy atoms / rings
32 / 4
Activity summary
Ki unknown 2.10000000 nM
1 activity record(s) imported
InChIKey
DOYICUYSNWKLEQ-UHFFFAOYSA-N
SMILES
COc1cc(CNC(=O)c2cc(Cn3ccnc3)cc(-c3ccoc3C)c2)cc(OC)c1
Aliases
BDBM468718 (preferred) US10807959, Example 130 (source_name) BDBM468718 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM468718 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM468718 Open - 10.7270/Q26Q219X
PubChem CID146370921 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(CNC(=O)c2cc(Cn3ccnc3)cc(-c3ccoc3C)c2)cc(OC)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB019558/BDB019558.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB019558/BDB019558.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB019558/BDB019558.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB019558/BDB019558.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB019558/BDB019558.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM468718 Ki 2.1 nM Very high DOI: 10.7270/Q26Q219X 1