< Back to small molecule database

US10807959, Example 133

E3L019561
Internal ID: BDB019561
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB019561/BDB019561.sdf
Basic Properties
Compound ID
E3L019561
Internal ID
BDB019561
Molecular formula
C24H25FN4O
Molecular weight
404.489000
Exact mass
404.201240
XLogP
4.3593
TPSA
59.8100
HBA / HBD
3 / 1
Rotatable bonds
7
Heavy atoms / rings
30 / 5
Activity summary
Ki unknown 3.50000000 nM
2 activity record(s) imported
InChIKey
NDWGDICKLLHJRK-UHFFFAOYSA-N
SMILES
Cc1nc(F)ccc1-c1cc(Cn2ccnc2)cc(C(=O)NC(C2CC2)C2CC2)c1
Aliases
BDBM468721 (preferred) US10807959, Example 133 (source_name) BDBM468721 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM468721 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM468721 Open - 10.7270/Q26Q219X
PubChem CID146370840 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc(F)ccc1-c1cc(Cn2ccnc2)cc(C(=O)NC(C2CC2)C2CC2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB019561/BDB019561.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB019561/BDB019561.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB019561/BDB019561.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB019561/BDB019561.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB019561/BDB019561.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM468721 Ki 3.5 nM Very high DOI: 10.7270/Q26Q219X 1
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM468721 Ki 4.6 nM Very high DOI: 10.7270/Q26Q219X 1