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US10807959, Example 168

E3L019702
Internal ID: BDB019702
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB019702/BDB019702.sdf
Basic Properties
Compound ID
E3L019702
Internal ID
BDB019702
Molecular formula
C28H31FN4O3
Molecular weight
490.579000
Exact mass
490.238019
XLogP
4.6124
TPSA
97.9700
HBA / HBD
6 / 3
Rotatable bonds
8
Heavy atoms / rings
36 / 4
Activity summary
Ki unknown 5.20000000 nM
1 activity record(s) imported
InChIKey
YJWXCBCTPSTTMV-UHFFFAOYSA-N
SMILES
COc1cc(CNC(=O)c2cc(CNC3=NCCC3)cc(-c3ccc(F)cc3C)c2N)cc(OC)c1
Aliases
BDBM468862 (preferred) US10807959, Example 168 (source_name) BDBM468862 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM468862 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM468862 Open - 10.7270/Q26Q219X
PubChem CID146371010 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(CNC(=O)c2cc(CNC3=NCCC3)cc(-c3ccc(F)cc3C)c2N)cc(OC)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB019702/BDB019702.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB019702/BDB019702.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB019702/BDB019702.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB019702/BDB019702.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB019702/BDB019702.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM468862 Ki 5.2 nM Very high DOI: 10.7270/Q26Q219X 1