< Back to small molecule database

US10844044, Example 116

E3L019920
Internal ID: BDB019920
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB019920/BDB019920.sdf
Basic Properties
Compound ID
E3L019920
Internal ID
BDB019920
Molecular formula
C29H31FN4O3
Molecular weight
502.590000
Exact mass
502.238019
XLogP
4.8990
TPSA
81.2700
HBA / HBD
4 / 2
Rotatable bonds
9
Heavy atoms / rings
37 / 4
Activity summary
Ki unknown 0.40000000 nM
1 activity record(s) imported
InChIKey
NZKQZTCHZGFDHM-UHFFFAOYSA-N
SMILES
CCn1ccn(Cc2cc(C(=O)NCc3cc(OC)cc(OC)c3)cc(-c3ccc(F)cc3C)c2)c1=N
Aliases
BDBM473289 (preferred) US10844044, Example 116 (source_name) BDBM473289 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM473289 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM473289 Open - 10.7270/Q21R6TKB
PubChem CID146456288 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCn1ccn(Cc2cc(C(=O)NCc3cc(OC)cc(OC)c3)cc(-c3ccc(F)cc3C)c2)c1=N keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB019920/BDB019920.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB019920/BDB019920.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB019920/BDB019920.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB019920/BDB019920.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB019920/BDB019920.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM473289 Ki 0.4 nM Very high DOI: 10.7270/Q21R6TKB 1