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US10844044, Example 53

E3L020028
Internal ID: BDB020028
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB020028/BDB020028.sdf
Basic Properties
Compound ID
E3L020028
Internal ID
BDB020028
Molecular formula
C27H25ClF2N4O
Molecular weight
494.973000
Exact mass
494.168496
XLogP
5.4998
TPSA
62.8100
HBA / HBD
2 / 2
Rotatable bonds
6
Heavy atoms / rings
35 / 4
Activity summary
Ki unknown 0.56000000 nM
1 activity record(s) imported
InChIKey
CBNDBDPZYFJHRL-UHFFFAOYSA-N
SMILES
Cc1cc(CNC(=O)c2cc(Cn3ccn(C)c3=N)cc(-c3c(C)cc(F)cc3F)c2)ccc1Cl
Aliases
BDBM473403 (preferred) US10844044, Example 53 (source_name) BDBM473403 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5
reported_binder bindingdb_reported Yes No low BindingDB:BDBM473403 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM473403 Open - 10.7270/Q21R6TKB
PubChem CID146457786 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(CNC(=O)c2cc(Cn3ccn(C)c3=N)cc(-c3c(C)cc(F)cc3F)c2)ccc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020028/BDB020028.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020028/BDB020028.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020028/BDB020028.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020028/BDB020028.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020028/BDB020028.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component
BindingDB:BDBM473403 Ki 0.56 nM Very high DOI: 10.7270/Q21R6TKB 1