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3-(Pyridin-2-yl)piperidine-2,6-dione

E3L020232
Internal ID: BDB020232
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB020232/BDB020232.sdf
Basic Properties
Compound ID
E3L020232
Internal ID
BDB020232
Molecular formula
C10H10N2O2
Molecular weight
190.202000
Exact mass
190.074228
XLogP
0.6018
TPSA
59.0600
HBA / HBD
3 / 1
Rotatable bonds
1
Heavy atoms / rings
14 / 2
Activity summary
Kd unknown 30000.00000000 nM
2 activity record(s) imported
InChIKey
SHHDFKPIDQTXOD-UHFFFAOYSA-N
SMILES
O=C1CCC(c2ccccn2)C(=O)N1
Aliases
BDBM475145 (preferred) 3-(Pyridin-2-yl)piperidine-2,6-dione (source_name) BDBM475145 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM475145 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM475145 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM475145 Open - 10.7270/Q2P84FZ1
PubChem CID129721444 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(c2ccccn2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020232/BDB020232.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020232/BDB020232.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020232/BDB020232.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020232/BDB020232.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020232/BDB020232.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM475145 Kd 30000 nM Low DOI: 10.7270/Q2P84FZ1 2 source records