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US10875851, Example 15

E3L020252
Internal ID: BDB020252
Activity data available Local docking-ready structure
Dock with P00748
Structure
/e3_file/ligand_db/generated/BDB020252/BDB020252.sdf
Basic Properties
Compound ID
E3L020252
Internal ID
BDB020252
Molecular formula
C46H57N5O4S
Molecular weight
776.060000
Exact mass
775.413126
XLogP
7.9928
TPSA
94.2200
HBA / HBD
7 / 2
Rotatable bonds
11
Heavy atoms / rings
56 / 8
Activity summary
IC50 unknown 8.40000000 nM
2 activity record(s) imported
InChIKey
XNEQJCWZCJRCEG-YCTQODCLSA-N
SMILES
O=C(NCc1cccs1)[C@@H]1CN(C(=O)Oc2cccc3ccccc23)CCN1C(=O)[C@@H](CC1CCCCC1)NC1CCC2(CC1)CCN(Cc1ccccc1)C2
Aliases
BDBM476359 (preferred) US10875851, Example 15 (source_name) BDBM476359 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P00748 F12
Coagulation factor XII
reported_binder bindingdb_reported Yes No low BindingDB:BDBM476359 medium
; target=Coagulation factor XII
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM476359 Open - 10.7270/Q2JD50W8
PubChem CID146263642 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(NCc1cccs1)[C@@H]1CN(C(=O)Oc2cccc3ccccc23)CCN1C(=O)[C@@H](CC1CCCCC1)NC1CCC2(CC1)CCN(Cc1ccccc1)C2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020252/BDB020252.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020252/BDB020252.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020252/BDB020252.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020252/BDB020252.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020252/BDB020252.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Coagulation factor XII
P00748
E3 ligase component
BindingDB:BDBM476359 IC50 8.4 nM Very high DOI: 10.7270/Q2JD50W8 1
Coagulation factor XII
P00748
E3 ligase component
BindingDB:BDBM476359 IC50 17 nM High DOI: 10.7270/Q2JD50W8 1