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BDBM490136

E3L020595
Internal ID: BDB020595
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB020595/BDB020595.sdf
Basic Properties
Compound ID
E3L020595
Internal ID
BDB020595
Molecular formula
C28H31N3O4
Molecular weight
473.573000
Exact mass
473.231456
XLogP
4.7693
TPSA
84.8300
HBA / HBD
4 / 2
Rotatable bonds
8
Heavy atoms / rings
35 / 4
Activity summary
IC50 unknown 550.00000000 nM
2 activity record(s) imported
InChIKey
YKZCOPIFHVTORP-UHFFFAOYSA-N
SMILES
COc1cccc(COC(C)c2c(C)c(C(=O)NCc3c(C)cc(C)[nH]c3=O)cc3cccn23)c1
Aliases
BDBM490136 (preferred) N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-5-[1-[(3-methoxyphenyl)methoxy]ethyl]-6-methylindolizine-7-carboxamide (source_name) BDBM490136 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490136 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490136 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM490136 Open - 10.7270/Q21C210W
PubChem CID134340582 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cccc(COC(C)c2c(C)c(C(=O)NCc3c(C)cc(C)[nH]c3=O)cc3cccn23)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020595/BDB020595.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020595/BDB020595.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020595/BDB020595.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020595/BDB020595.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020595/BDB020595.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM490136 IC50 550 nM Moderate DOI: 10.7270/Q21C210W 1
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM490136 IC50 550 nM Moderate DOI: 10.7270/Q21C210W 1