< Back to small molecule database

BDBM490143

E3L020602
Internal ID: BDB020602
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB020602/BDB020602.sdf
Basic Properties
Compound ID
E3L020602
Internal ID
BDB020602
Molecular formula
C25H29N5O3
Molecular weight
447.539000
Exact mass
447.227040
XLogP
3.4942
TPSA
93.4200
HBA / HBD
4 / 2
Rotatable bonds
7
Heavy atoms / rings
33 / 4
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
WSXHXLGCDGFPEI-UHFFFAOYSA-N
SMILES
Cc1cc(C)c(CNC(=O)c2cc3cccn3c(C(C)OCc3ccnn3C)c2C)c(=O)[nH]1
Aliases
BDBM490143 (preferred) N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-6-methyl-5-[1-[(2-methylpyrazol-3-yl)methoxy]ethyl]indolizine-7-carboxamide (source_name) BDBM490143 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490143 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490143 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM490143 Open - 10.7270/Q21C210W
PubChem CID134340563 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(C)c(CNC(=O)c2cc3cccn3c(C(C)OCc3ccnn3C)c2C)c(=O)[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020602/BDB020602.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020602/BDB020602.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020602/BDB020602.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020602/BDB020602.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020602/BDB020602.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM490143 IC50 <100 nM High DOI: 10.7270/Q21C210W 1
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM490143 IC50 <100 nM High DOI: 10.7270/Q21C210W 1