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BDBM490218

E3L020669
Internal ID: BDB020669
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB020669/BDB020669.sdf
Basic Properties
Compound ID
E3L020669
Internal ID
BDB020669
Molecular formula
C36H47N5O5
Molecular weight
629.802000
Exact mass
629.357720
XLogP
5.2627
TPSA
100.5400
HBA / HBD
7 / 2
Rotatable bonds
10
Heavy atoms / rings
46 / 5
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
PQNHUEFQYCFPCV-UHFFFAOYSA-N
SMILES
COc1cc(-c2cc3cc(C(=O)NCc4c(C)cc(C)[nH]c4=O)c(C)c(C(C)N4CCC(N(C)C)CC4)n3c2)cc(OC)c1OC
Aliases
BDBM490218 (preferred) 5-[1-[4-(dimethylamino)piperidin-1-yl]ethyl]-N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-6-methyl-2-(3,4,5-trimethoxyphenyl)indolizine-7-carboxamide (source_name) BDBM490218 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490218 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490218 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM490218 Open - 10.7270/Q21C210W
PubChem CID138733723 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(-c2cc3cc(C(=O)NCc4c(C)cc(C)[nH]c4=O)c(C)c(C(C)N4CCC(N(C)C)CC4)n3c2)cc(OC)c1OC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020669/BDB020669.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020669/BDB020669.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020669/BDB020669.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020669/BDB020669.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020669/BDB020669.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM490218 IC50 <100 nM High DOI: 10.7270/Q21C210W 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM490218 IC50 <100 nM High DOI: 10.7270/Q21C210W 1