< Back to small molecule database

BDBM490253

E3L020702
Internal ID: BDB020702
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB020702/BDB020702.sdf
Basic Properties
Compound ID
E3L020702
Internal ID
BDB020702
Molecular formula
C33H41N5O2
Molecular weight
539.724000
Exact mass
539.326026
XLogP
5.2369
TPSA
72.8500
HBA / HBD
4 / 2
Rotatable bonds
7
Heavy atoms / rings
40 / 5
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
RTZCXOLAUBSJSQ-UHFFFAOYSA-N
SMILES
Cc1cc(C)c(CNC(=O)c2cc3c(-c4ccccc4)ccn3c(C(C)N3CCC(N(C)C)CC3)c2C)c(=O)[nH]1
Aliases
BDBM490253 (preferred) 5-[1-[4-(dimethylamino)piperidin-1-yl]ethyl]-N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-6-methyl-1-phenylindolizine-7-carboxamide (source_name) BDBM490253 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490253 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM490253 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM490253 Open - 10.7270/Q21C210W
PubChem CID134340891 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(C)c(CNC(=O)c2cc3c(-c4ccccc4)ccn3c(C(C)N3CCC(N(C)C)CC3)c2C)c(=O)[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020702/BDB020702.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020702/BDB020702.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020702/BDB020702.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020702/BDB020702.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020702/BDB020702.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM490253 IC50 <100 nM High DOI: 10.7270/Q21C210W 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM490253 IC50 <100 nM High DOI: 10.7270/Q21C210W 1