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BDBM498137

E3L020839
Internal ID: BDB020839
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB020839/BDB020839.sdf
Basic Properties
Compound ID
E3L020839
Internal ID
BDB020839
Molecular formula
C20H20FN5O2
Molecular weight
381.411000
Exact mass
381.160103
XLogP
3.0042
TPSA
73.5700
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
28 / 5
Activity summary
IC50 unknown 7.30000000 nM
2 activity record(s) imported
InChIKey
YIFZTYMYYDQEER-UHFFFAOYSA-N
SMILES
Fc1ccc2c(c1CNc1ncc(C3=CCCOCC3)c3nncn13)CCO2
Aliases
BDBM498137 (preferred) N-[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]-8-(2,3,6,7-tetrahydrooxepin-4-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine (source_name) BDBM498137 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM498137 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM498137 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM498137 Open - 10.7270/Q2GX4FP4
PubChem CID138516064 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Fc1ccc2c(c1CNc1ncc(C3=CCCOCC3)c3nncn13)CCO2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020839/BDB020839.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020839/BDB020839.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020839/BDB020839.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020839/BDB020839.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020839/BDB020839.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM498137 IC50 7.3 nM Very high DOI: 10.7270/Q2GX4FP4 1
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM498137 IC50 7.3 nM Very high DOI: 10.7270/Q2GX4FP4 1