< Back to small molecule database

BDBM498146

E3L020847
Internal ID: BDB020847
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB020847/BDB020847.sdf
Basic Properties
Compound ID
E3L020847
Internal ID
BDB020847
Molecular formula
C20H23FN6O3S
Molecular weight
446.508000
Exact mass
446.153638
XLogP
1.9494
TPSA
101.7200
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
31 / 5
Activity summary
IC50 unknown 11.00000000 nM
2 activity record(s) imported
InChIKey
YKDXNDLHEXXOTC-UHFFFAOYSA-N
SMILES
CS(=O)(=O)N1CCC(c2cnc(NCc3c(F)ccc4c3CCO4)n3cnnc23)CC1
Aliases
BDBM498146 (preferred) N-[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]-8-(1-methylsulfonylpiperidin-4-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine (source_name) BDBM498146 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM498146 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM498146 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM498146 Open - 10.7270/Q2GX4FP4
PubChem CID138516129 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CS(=O)(=O)N1CCC(c2cnc(NCc3c(F)ccc4c3CCO4)n3cnnc23)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020847/BDB020847.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020847/BDB020847.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020847/BDB020847.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020847/BDB020847.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020847/BDB020847.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM498146 IC50 11 nM High DOI: 10.7270/Q2GX4FP4 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM498146 IC50 11 nM High DOI: 10.7270/Q2GX4FP4 1