< Back to small molecule database

BDBM498925

E3L020905
Internal ID: BDB020905
Activity data available Local docking-ready structure
Dock with P00748
Structure
/e3_file/ligand_db/generated/BDB020905/BDB020905.sdf
Basic Properties
Compound ID
E3L020905
Internal ID
BDB020905
Molecular formula
C34H56N6O3S
Molecular weight
628.928000
Exact mass
628.413461
XLogP
4.5320
TPSA
88.2300
HBA / HBD
6 / 2
Rotatable bonds
12
Heavy atoms / rings
44 / 5
Activity summary
IC50 unknown 15.00000000 nM
1 activity record(s) imported
InChIKey
SHNPTOPUNIOIIA-FRXPANAUSA-N
SMILES
CN(C)CCCC[C@H](C(=O)N1CC[C@@H](NC(=O)N2CCC3(CC2)CC3)[C@@H](C(=O)NCc2cccs2)C1)N(C)C1CCCCC1
Aliases
BDBM498925 (preferred) N-{(3S,4R)-1-(N~2~-cyclohexyl-N~2~,N~6~,N~6~-trimethyl-D-lysyl)-3-[(thiophen-2-ylmethyl)carbamoyl]pi-peridin-4-yl}-6-azaspiro[2.5]octane-6-carboxamide (source_name) BDBM498925 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P00748 F12
Coagulation factor XII		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM498925 medium
; target=Coagulation factor XII
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM498925 Open - 10.7270/Q2QF8X0T
PubChem CID154623824 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)CCCC[C@H](C(=O)N1CC[C@@H](NC(=O)N2CCC3(CC2)CC3)[C@@H](C(=O)NCc2cccs2)C1)N(C)C1CCCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB020905/BDB020905.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB020905/BDB020905.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB020905/BDB020905.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB020905/BDB020905.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB020905/BDB020905.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Coagulation factor XII
P00748
E3 ligase component 		BindingDB:BDBM498925 IC50 15 nM High DOI: 10.7270/Q2QF8X0T 1