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BDBM513786

E3L021305

Internal ID: BDB021305

Activity data available Local docking-ready structure

Dock with O75530 Dock with Q09028

Structure

/e3_file/ligand_db/generated/BDB021305/BDB021305.sdf

Basic Properties

Compound ID

E3L021305

Internal ID

BDB021305

Molecular formula

C22H17FN6O2

Molecular weight

416.416000

Exact mass

416.139702

XLogP

2.8414

TPSA

108.3600

HBA / HBD

7 / 2

Rotatable bonds

Heavy atoms / rings

31 / 5

Activity summary

IC50 < 100.00000000 nM
8 activity record(s) imported

InChIKey

RELJOVYVSLYYAF-UHFFFAOYSA-N

SMILES

N#Cc1cn2c(NCc3c(F)ccc4c3CCO4)ncc(-c3ccc(CO)nc3)c2n1

Aliases

BDBM513786 (preferred) 5-(((5-Fluoro-2,3-dihydrobenzofuran-4-yl)methyl)amino)-8-(6-(hydroxymethyl)pyridin-3-yl)imidazo[1,2-c]pyrimidine-2-carbonitrile (source_name) BDBM513786 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
O75530	EED Polycomb protein EED	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM513786	medium ; target=Histone-lysine N-methyltransferase EZH2; Polycomb protein EED
Q09028	RBBP4;RBAP48 Histone-binding protein RBBP4	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM513786	medium ; target=Histone-lysine N-methyltransferase EZH2; Polycomb protein EED

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM513786	Open	-	10.7270/Q2V69NQ4; 10.7270/Q2J969K9; 10.7270/Q2HQ43R4
PubChem	CID139371653	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	N#Cc1cn2c(NCc3c(F)ccc4c3CCO4)ncc(-c3ccc(CO)nc3)c2n1	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB021305/BDB021305.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB021305/BDB021305.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB021305/BDB021305.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB021305/BDB021305.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB021305/BDB021305.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Histone-lysine N-methyltransferase EZH2 O75530 E3 ligase component	BindingDB:BDBM513786	IC50	<100 nM	High	DOI: 10.7270/Q2J969K9	1
Histone-lysine N-methyltransferase EZH2 Q09028 E3 ligase component	BindingDB:BDBM513786	IC50	<100 nM	High	DOI: 10.7270/Q2J969K9	1
Histone-lysine N-methyltransferase EZH2 O75530 E3 ligase component	BindingDB:BDBM513786	IC50	300 nM	Moderate	DOI: 10.7270/Q2V69NQ4	1
Histone-lysine N-methyltransferase EZH2 O75530 E3 ligase component	BindingDB:BDBM513786	IC50	300 nM	Moderate	DOI: 10.7270/Q2J969K9	1
Histone-lysine N-methyltransferase EZH2 Q09028 E3 ligase component	BindingDB:BDBM513786	IC50	300 nM	Moderate	DOI: 10.7270/Q2V69NQ4	1
Histone-lysine N-methyltransferase EZH2 Q09028 E3 ligase component	BindingDB:BDBM513786	IC50	300 nM	Moderate	DOI: 10.7270/Q2J969K9	1
Polycomb protein EED O75530 E3 ligase component	BindingDB:BDBM513786	IC50	300 nM	Moderate	DOI: 10.7270/Q2HQ43R4	1
Polycomb protein EED Q09028 E3 ligase component	BindingDB:BDBM513786	IC50	300 nM	Moderate	DOI: 10.7270/Q2HQ43R4	1