< Back to small molecule database

US11111237, Example 74

E3L021483
Internal ID: BDB021483
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB021483/BDB021483.sdf
Basic Properties
Compound ID
E3L021483
Internal ID
BDB021483
Molecular formula
C27H33N3O5
Molecular weight
479.577000
Exact mass
479.242021
XLogP
1.9416
TPSA
82.5500
HBA / HBD
6 / 1
Rotatable bonds
8
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
HQUBOFYNYQOOIP-JOCHJYFZSA-N
SMILES
O=C1CCCN1CCOc1ccc2c(c1)OCCN(C[C@H](O)CN1CCc3ccccc3C1)C2=O
Aliases
BDBM517933 (preferred) US11111237, Example 74 (source_name) BDBM517933 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM517933 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM517933 Open - 10.7270/Q20K2DP5
PubChem CID156207667 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCCN1CCOc1ccc2c(c1)OCCN(C[C@H](O)CN1CCc3ccccc3C1)C2=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB021483/BDB021483.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB021483/BDB021483.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB021483/BDB021483.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB021483/BDB021483.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB021483/BDB021483.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM517933 IC50 550 nM Moderate DOI: 10.7270/Q20K2DP5 1