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US11111237, Example 169

E3L021574
Internal ID: BDB021574
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB021574/BDB021574.sdf
Basic Properties
Compound ID
E3L021574
Internal ID
BDB021574
Molecular formula
C29H38N4O4
Molecular weight
506.647000
Exact mass
506.289306
XLogP
1.9930
TPSA
76.5600
HBA / HBD
6 / 1
Rotatable bonds
7
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
HBDVPVNJLBWXDI-RUZDIDTESA-N
SMILES
CC1(C)CN(C[C@H](O)CN2CCc3ccccc3C2)C(=O)c2ccc(CN3CCN(C=O)CC3)cc2O1
Aliases
BDBM518029 (preferred) US11111237, Example 169 (source_name) BDBM518029 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM518029 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM518029 Open - 10.7270/Q20K2DP5
PubChem CID156207846 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(C)CN(C[C@H](O)CN2CCc3ccccc3C2)C(=O)c2ccc(CN3CCN(C=O)CC3)cc2O1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB021574/BDB021574.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB021574/BDB021574.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB021574/BDB021574.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB021574/BDB021574.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB021574/BDB021574.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM518029 IC50 550 nM Moderate DOI: 10.7270/Q20K2DP5 1