< Back to small molecule database

US11111237, Example 206

E3L021609
Internal ID: BDB021609
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB021609/BDB021609.sdf
Basic Properties
Compound ID
E3L021609
Internal ID
BDB021609
Molecular formula
C27H34FN3O4
Molecular weight
483.584000
Exact mass
483.253335
XLogP
2.3614
TPSA
65.4800
HBA / HBD
6 / 1
Rotatable bonds
6
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 550.00000000 nM
1 activity record(s) imported
InChIKey
YJVMLWSFVPOFRK-BURHJUHKSA-N
SMILES
CN1CCC(Oc2ccc3c(c2)OCCN(C[C@H](O)CN2CCc4ccccc4C2)C3=O)C(F)C1
Aliases
BDBM518067 (preferred) US11111237, Example 206 (source_name) BDBM518067 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM518067 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM518067 Open - 10.7270/Q20K2DP5
PubChem CID156207969 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCC(Oc2ccc3c(c2)OCCN(C[C@H](O)CN2CCc4ccccc4C2)C3=O)C(F)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB021609/BDB021609.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB021609/BDB021609.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB021609/BDB021609.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB021609/BDB021609.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB021609/BDB021609.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM518067 IC50 550 nM Moderate DOI: 10.7270/Q20K2DP5 1