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BDBM518931

E3L021816
Internal ID: BDB021816
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB021816/BDB021816.sdf
Basic Properties
Compound ID
E3L021816
Internal ID
BDB021816
Molecular formula
C25H25F4N5O
Molecular weight
487.501000
Exact mass
487.199523
XLogP
5.3332
TPSA
61.3600
HBA / HBD
4 / 1
Rotatable bonds
6
Heavy atoms / rings
35 / 4
Activity summary
IC50 > 26649.00000000 nM
1 activity record(s) imported
InChIKey
OKHSAMOHLIHOLN-UHFFFAOYSA-N
SMILES
O=C(Nc1cc(F)cc(C(F)(F)F)c1)N(Cc1ccccc1)C1CCN(Cc2cnccn2)CC1
Aliases
BDBM518931 (preferred) 1-Benzyl-3-[3-fluoro-5-(trifluoromethyl)phenyl]-1-[1-(pyrazin-2-ylmethyl)piperidin-4-yl]urea (source_name) BDBM518931 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM518931 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM518931 Open - 10.7270/Q2736V2B
PubChem CID126711186 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(Nc1cc(F)cc(C(F)(F)F)c1)N(Cc1ccccc1)C1CCN(Cc2cnccn2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB021816/BDB021816.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB021816/BDB021816.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB021816/BDB021816.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB021816/BDB021816.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB021816/BDB021816.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM518931 IC50 >26649 nM Low DOI: 10.7270/Q2736V2B 1